No. words: 1459; after pruning: 1433


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:784)  609  1.07 0.15 0.00  USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1        1   652 (0)  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   (22)   785   133 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   807 
   31    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1     9 
   35  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   773 
   48    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1    25 
   83  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   725 
   87    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1    64 
  163  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   645 
  167    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   144 
  175  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   633 
  179    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   156 
  195  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   613 
  203    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   180 
  207  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   601 
  215    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   192 
  227  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   581 
  231    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   208 
  243  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   565 
  255    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   232 
  259  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   549 
  263    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   240 
  275  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   533 
  279    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   256 
  291  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   517 
  295    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   272 
  307  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   501 
  319    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   296 
  335  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   473 
  359    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   336 
  363  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   445 
  391    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   368 
  395  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   413 
  451    USDA029F_F07_BE518358Td06P043E12P017H101F1_053.ab1   428 
  459  C USDA029R_F07_BE518358Td06P043E12P017H101R1_053.ab1   349 
Contig length: old 807, new 807

Contig length: old 807, new 807
New start: 0 
S Change at: 27; seg lengths: entry 1, contig 1