No. words: 1637; after pruning: 1611


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.2 (1,1:773)  745  0.00 0.00 0.00  USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1        1   774 (40)  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   (49)   774     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   823 
   54    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1     5 
   66  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   758 
   70    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1    21 
  126  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   698 
  134    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1    85 
  138  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   686 
  146    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1    97 
  178  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   646 
  218    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   169 
  230  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   594 
  234    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   185 
  246  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   578 
  250    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   201 
  262  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   562 
  278    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   229 
  318  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   506 
  334    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   285 
  338  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   486 
  346    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   297 
  362  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   462 
  370    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   321 
  394  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   430 
  402    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   353 
  446  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   378 
  450    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   401 
  470  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1   354 
  806    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   757 
  810  C USDA034R_G01_BE518358Td07P035F06P017H101R1_003.ab1    14 
  818    USDA034F_G01_BE518358Td07P035F06P017H101F1_003.ab1   769 
Contig length: old 863, new 863

Contig length: old 863, new 863
New start: 0