No. words: 1241; after pruning: 1215


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.4 (1,1:754)  446  1.66 0.00 0.00  USDA029F_G07_BE518358Td07P043E12P017H101F1_051.ab1       61   543 (3)  C USDA029R_G07_BE518358Td07P043E12P017H101R1_051.ab1   (0)   695   213 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1    USDA029F_G07_BE518358Td07P043E12P017H101F1_051.ab1     1 
  161  C USDA029R_G07_BE518358Td07P043E12P017H101R1_051.ab1   595 
  165    USDA029F_G07_BE518358Td07P043E12P017H101F1_051.ab1   165 
  181  C USDA029R_G07_BE518358Td07P043E12P017H101R1_051.ab1   575 
  185    USDA029F_G07_BE518358Td07P043E12P017H101F1_051.ab1   185 
  266  C USDA029R_G07_BE518358Td07P043E12P017H101R1_051.ab1   490 
  270    USDA029F_G07_BE518358Td07P043E12P017H101F1_051.ab1   270 
  308  C USDA029R_G07_BE518358Td07P043E12P017H101R1_051.ab1   448 
  312    USDA029F_G07_BE518358Td07P043E12P017H101F1_051.ab1   312 
  368  C USDA029R_G07_BE518358Td07P043E12P017H101R1_051.ab1   388 
  376    USDA029F_G07_BE518358Td07P043E12P017H101F1_051.ab1   376 
  388  C USDA029R_G07_BE518358Td07P043E12P017H101R1_051.ab1   368 
  416    USDA029F_G07_BE518358Td07P043E12P017H101F1_051.ab1   416 
  420  C USDA029R_G07_BE518358Td07P043E12P017H101R1_051.ab1   336 
Contig length: old 755, new 755

Contig length: old 755, new 755
New start: 0