No. words: 1641; after pruning: 1615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.1 (1,1:779)  748  0.13 0.00 0.00  USDA034F_H01_BE518358Td08P035F06P017H101F1_001.ab1        1   780 (42)  C USDA034R_H01_BE518358Td08P035F06P017H101R1_001.ab1   (39)   780     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C USDA034R_H01_BE518358Td08P035F06P017H101R1_001.ab1   819 
   47    USDA034F_H01_BE518358Td08P035F06P017H101F1_001.ab1     8 
   63  C USDA034R_H01_BE518358Td08P035F06P017H101R1_001.ab1   757 
   67    USDA034F_H01_BE518358Td08P035F06P017H101F1_001.ab1    28 
  123  C USDA034R_H01_BE518358Td08P035F06P017H101R1_001.ab1   697 
  127    USDA034F_H01_BE518358Td08P035F06P017H101F1_001.ab1    88 
  191  C USDA034R_H01_BE518358Td08P035F06P017H101R1_001.ab1   629 
  199    USDA034F_H01_BE518358Td08P035F06P017H101F1_001.ab1   160 
  235  C USDA034R_H01_BE518358Td08P035F06P017H101R1_001.ab1   585 
  239    USDA034F_H01_BE518358Td08P035F06P017H101F1_001.ab1   200 
  467  C USDA034R_H01_BE518358Td08P035F06P017H101R1_001.ab1   353 
  815    USDA034F_H01_BE518358Td08P035F06P017H101F1_001.ab1   776 
Contig length: old 861, new 861

Contig length: old 861, new 861
New start: 0