No. words: 1653; after pruning: 1627


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 13.8 (1,1:793)  749  0.00 0.13 0.13  USDA034F_A02_BE518358Td09P035F06P017H101F1_016.ab1        4   792 (33)  C USDA034R_A02_BE518358Td09P035F06P017H101R1_016.ab1   (37)   791     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  390 nodes

 197 str. conn. components

Path
    1  C USDA034R_A02_BE518358Td09P035F06P017H101R1_016.ab1   828 
   48    USDA034F_A02_BE518358Td09P035F06P017H101F1_016.ab1    13 
  352  C USDA034R_A02_BE518358Td09P035F06P017H101R1_016.ab1   477 
  356    USDA034F_A02_BE518358Td09P035F06P017H101F1_016.ab1   321 
  364  C USDA034R_A02_BE518358Td09P035F06P017H101R1_016.ab1   465 
  368    USDA034F_A02_BE518358Td09P035F06P017H101F1_016.ab1   333 
  472  C USDA034R_A02_BE518358Td09P035F06P017H101R1_016.ab1   357 
  808    USDA034F_A02_BE518358Td09P035F06P017H101F1_016.ab1   773 
  820  C USDA034R_A02_BE518358Td09P035F06P017H101R1_016.ab1    10 
  824    USDA034F_A02_BE518358Td09P035F06P017H101F1_016.ab1   789 
Contig length: old 859, new 860

Contig length: old 860, new 860
New start: 0