No. words: 1610; after pruning: 1570


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 16.4 (1,1:760)  731  0.13 0.00 0.00  USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1        3   761 (47)  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   (43)   759     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  378 nodes

 191 str. conn. components

Path
    1  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   802 
   51    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1    10 
   55  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   748 
   59    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1    18 
  210  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   593 
  222    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1   181 
  310  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   493 
  314    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1   273 
  450  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   353 
  454    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1   413 
  478  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   325 
  486    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1   445 
  490  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   313 
  594    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1   553 
  598  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   205 
  666    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1   625 
  670  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   133 
  694    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1   653 
  702  C USDA029R_A08_BE518358Td09P043E12P017H101R1_064.ab1   101 
  798    USDA029F_A08_BE518358Td09P043E12P017H101F1_064.ab1   757 
Contig length: old 849, new 849

Contig length: old 849, new 849
New start: 0