No. words: 1632; after pruning: 1606


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 15.8 (1,1:779)  743  0.00 0.00 0.13  USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1        1   777 (31)  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   (45)   779     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   824 
   53    USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1     8 
   61  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   764 
   65    USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1    20 
  189  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   636 
  197    USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1   152 
  205  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   620 
  209    USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1   164 
  233  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   592 
  237    USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1   192 
  333  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   492 
  353    USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1   308 
  357  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   468 
  365    USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1   320 
  469  C USDA034R_B02_BE518358Td10P035F06P017H101R1_014.ab1   356 
  805    USDA034F_B02_BE518358Td10P035F06P017H101F1_014.ab1   760 
Contig length: old 852, new 853

Contig length: old 853, new 853
New start: 0