No. words: 1790; after pruning: 1736


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 18.1 (1,1:897)  823  0.23 0.00 0.12  USDA011F_A05_BE518358Tu01P017H04P017H10F1_047.ab1       34   895 (31)  C USDA011R_A05_BE518358Tu01P017H04P017H10R1_047.ab1   (0)   864     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  418 nodes

 211 str. conn. components

Path
    1    USDA011F_A05_BE518358Tu01P017H04P017H10F1_047.ab1     1 
  557  C USDA011R_A05_BE518358Tu01P017H04P017H10R1_047.ab1   342 
  889    USDA011F_A05_BE518358Tu01P017H04P017H10F1_047.ab1   889 
Contig length: old 926, new 926

Contig length: old 926, new 926
New start: 0