No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    8    0.0 5.1 (1,1:370)  351  0.00 0.55 0.00  USDA013F_H03_BE518403Ld02P032A02P032A08F1_017.ab1       10   370 (144)  C USDA013R_H03_BE518403Ld02P032A02P032A08R1_017.ab1   (177)   363     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 8       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C USDA013R_H03_BE518403Ld02P032A02P032A08R1_017.ab1   540 
  412    USDA013F_H03_BE518403Ld02P032A02P032A08F1_017.ab1   242 
Contig length: old 683, new 684

Contig length: old 684, new 684
New start: 0