No. words: 721; after pruning: 695


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    2   -0.4 -0.4 (1,1:374)  137  1.84 1.84 0.00  USDA013F_B04_BE518403Ld04P032A02P032A08F1_030.ab1        5   167 (0)  C USDA013R_B04_BE518403Ld04P032A02P032A08R1_030.ab1   (181)   373   208 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.4       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  68 nodes

 36 str. conn. components

Path
    1  C USDA013R_B04_BE518403Ld04P032A02P032A08R1_030.ab1   554 
Contig length: old 554, new 554

Contig length: old 554, new 554
New start: 0