No. words: 1064; after pruning: 1038


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 5.8 (1,1:373)  356  0.00 0.00 0.28  USDA013F_D04_BE518403Ld06P032A02P032A08F1_026.ab1       12   374 (150)  C USDA013R_D04_BE518403Ld06P032A02P032A08R1_026.ab1   (178)   362     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C USDA013R_D04_BE518403Ld06P032A02P032A08R1_026.ab1   540 
  414    USDA013F_D04_BE518403Ld06P032A02P032A08F1_026.ab1   247 
  418  C USDA013R_D04_BE518403Ld06P032A02P032A08R1_026.ab1   123 
  438    USDA013F_D04_BE518403Ld06P032A02P032A08F1_026.ab1   271 
  446  C USDA013R_D04_BE518403Ld06P032A02P032A08R1_026.ab1    95 
  466    USDA013F_D04_BE518403Ld06P032A02P032A08F1_026.ab1   299 
  474  C USDA013R_D04_BE518403Ld06P032A02P032A08R1_026.ab1    67 
  486    USDA013F_D04_BE518403Ld06P032A02P032A08F1_026.ab1   319 
  490  C USDA013R_D04_BE518403Ld06P032A02P032A08R1_026.ab1    51 
  494    USDA013F_D04_BE518403Ld06P032A02P032A08F1_026.ab1   327 
Contig length: old 690, new 691

Contig length: old 691, new 691
New start: 0