No. words: 1067; after pruning: 1041


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.2 (1,1:372)  351  0.00 0.82 0.00  USDA013F_G04_BE518403Ld09P032A02P032A08F1_020.ab1        7   372 (155)  C USDA013R_G04_BE518403Ld09P032A02P032A08R1_020.ab1   (171)   369     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  176 nodes

 90 str. conn. components

Path
    1  C USDA013R_G04_BE518403Ld09P032A02P032A08R1_020.ab1   540 
  414    USDA013F_G04_BE518403Ld09P032A02P032A08F1_020.ab1   246 
  418  C USDA013R_G04_BE518403Ld09P032A02P032A08R1_020.ab1   123 
  434    USDA013F_G04_BE518403Ld09P032A02P032A08F1_020.ab1   266 
  442  C USDA013R_G04_BE518403Ld09P032A02P032A08R1_020.ab1    99 
  474    USDA013F_G04_BE518403Ld09P032A02P032A08F1_020.ab1   306 
  482  C USDA013R_G04_BE518403Ld09P032A02P032A08R1_020.ab1    59 
  494    USDA013F_G04_BE518403Ld09P032A02P032A08F1_020.ab1   326 
  502  C USDA013R_G04_BE518403Ld09P032A02P032A08R1_020.ab1    39 
  514    USDA013F_G04_BE518403Ld09P032A02P032A08F1_020.ab1   346 
Contig length: old 694, new 695

Contig length: old 695, new 695
New start: 0