No. words: 1844; after pruning: 1818


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.2 (1,1:1740)  102  0.00 0.00 0.00  USDA010F_C02_BE518435Ld05P017A05P017A11F1_012.ab1      791   893 (0)  C USDA010R_C02_BE518435Ld05P017A05P017A11R1_012.ab1   (0)   951   849 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  54 nodes

 29 str. conn. components

Path
    1    USDA010F_C02_BE518435Ld05P017A05P017A11F1_012.ab1     1 
  810  C USDA010R_C02_BE518435Ld05P017A05P017A11R1_012.ab1   932 
  818    USDA010F_C02_BE518435Ld05P017A05P017A11F1_012.ab1   818 
  830  C USDA010R_C02_BE518435Ld05P017A05P017A11R1_012.ab1   912 
  838    USDA010F_C02_BE518435Ld05P017A05P017A11F1_012.ab1   838 
  842  C USDA010R_C02_BE518435Ld05P017A05P017A11R1_012.ab1   900 
  854    USDA010F_C02_BE518435Ld05P017A05P017A11F1_012.ab1   854 
  862  C USDA010R_C02_BE518435Ld05P017A05P017A11R1_012.ab1   880 
Contig length: old 1741, new 1741

Contig length: old 1741, new 1741
New start: 0