No. words: 1800; after pruning: 1774


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.3 (1,1:1739)   60  0.00 0.00 0.00  USDA010F_D02_BE518435Ld06P017A05P017A11F1_010.ab1      829   888 (0)  C USDA010R_D02_BE518435Ld06P017A05P017A11R1_010.ab1   (0)   912   853 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1    USDA010F_D02_BE518435Ld06P017A05P017A11F1_010.ab1     1 
  832  C USDA010R_D02_BE518435Ld06P017A05P017A11R1_010.ab1   909 
  836    USDA010F_D02_BE518435Ld06P017A05P017A11F1_010.ab1   836 
  848  C USDA010R_D02_BE518435Ld06P017A05P017A11R1_010.ab1   893 
  852    USDA010F_D02_BE518435Ld06P017A05P017A11F1_010.ab1   852 
  856  C USDA010R_D02_BE518435Ld06P017A05P017A11R1_010.ab1   885 
  864    USDA010F_D02_BE518435Ld06P017A05P017A11F1_010.ab1   864 
  880  C USDA010R_D02_BE518435Ld06P017A05P017A11R1_010.ab1   861 
Contig length: old 1740, new 1740

Contig length: old 1740, new 1740
New start: 0