No. words: 1801; after pruning: 1775


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.1 (1,1:1737)   60  1.59 0.00 0.00  USDA010F_F02_BE518435Ld08P017A05P017A11F1_006.ab1      823   885 (0)  C USDA010R_F02_BE518435Ld08P017A05P017A11R1_006.ab1   (0)   916   854 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1    USDA010F_F02_BE518435Ld08P017A05P017A11F1_006.ab1     1 
  846  C USDA010R_F02_BE518435Ld08P017A05P017A11R1_006.ab1   893 
  850    USDA010F_F02_BE518435Ld08P017A05P017A11F1_006.ab1   850 
  862  C USDA010R_F02_BE518435Ld08P017A05P017A11R1_006.ab1   877 
  874    USDA010F_F02_BE518435Ld08P017A05P017A11F1_006.ab1   874 
  878  C USDA010R_F02_BE518435Ld08P017A05P017A11R1_006.ab1   861 
Contig length: old 1738, new 1738

Contig length: old 1738, new 1738
New start: 0