No. words: 1809; after pruning: 1783


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.3 (1,1:1598)  207  0.48 0.00 0.00  USDA028F_A06_BE518435Sn26P043D11P017A051F1_048.ab1      680   889 (0)  C USDA028R_A06_BE518435Sn26P043D11P017A051R1_048.ab1   (0)   920   711 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  104 nodes

 54 str. conn. components

Path
    1    USDA028F_A06_BE518435Sn26P043D11P017A051F1_048.ab1     1 
  763  C USDA028R_A06_BE518435Sn26P043D11P017A051R1_048.ab1   837 
  767    USDA028F_A06_BE518435Sn26P043D11P017A051F1_048.ab1   767 
  791  C USDA028R_A06_BE518435Sn26P043D11P017A051R1_048.ab1   809 
  795    USDA028F_A06_BE518435Sn26P043D11P017A051F1_048.ab1   795 
  807  C USDA028R_A06_BE518435Sn26P043D11P017A051R1_048.ab1   793 
  825    USDA028F_A06_BE518435Sn26P043D11P017A051F1_048.ab1   825 
  833  C USDA028R_A06_BE518435Sn26P043D11P017A051R1_048.ab1   767 
Contig length: old 1599, new 1599

Contig length: old 1599, new 1599
New start: 0