No. words: 1784; after pruning: 1758


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.2 (1,1:1592)  191  0.00 0.00 0.00  USDA028F_G06_BE518435Sn32P043D11P017A051F1_036.ab1      697   887 (0)  C USDA028R_G06_BE518435Sn32P043D11P017A051R1_036.ab1   (0)   897   707 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  98 nodes

 51 str. conn. components

Path
    1    USDA028F_G06_BE518435Sn32P043D11P017A051F1_036.ab1     1 
  760  C USDA028R_G06_BE518435Sn32P043D11P017A051R1_036.ab1   834 
  764    USDA028F_G06_BE518435Sn32P043D11P017A051F1_036.ab1   764 
  800  C USDA028R_G06_BE518435Sn32P043D11P017A051R1_036.ab1   794 
  808    USDA028F_G06_BE518435Sn32P043D11P017A051F1_036.ab1   808 
  816  C USDA028R_G06_BE518435Sn32P043D11P017A051R1_036.ab1   778 
  828    USDA028F_G06_BE518435Sn32P043D11P017A051F1_036.ab1   828 
  836  C USDA028R_G06_BE518435Sn32P043D11P017A051R1_036.ab1   758 
  852    USDA028F_G06_BE518435Sn32P043D11P017A051F1_036.ab1   852 
  860  C USDA028R_G06_BE518435Sn32P043D11P017A051R1_036.ab1   734 
Contig length: old 1593, new 1593

Contig length: old 1593, new 1593
New start: 0