No. words: 1884; after pruning: 1858


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.6 (1,1:1645)  234  0.42 0.00 0.00  USDA028F_A04_BE518435Ta11P043D11P017A051F1_032.ab1      708   945 (0)  C USDA028R_A04_BE518435Ta11P043D11P017A051R1_032.ab1   (0)   939   702 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  118 nodes

 61 str. conn. components

Path
    1    USDA028F_A04_BE518435Ta11P043D11P017A051F1_032.ab1     1 
  809  C USDA028R_A04_BE518435Ta11P043D11P017A051R1_032.ab1   838 
  817    USDA028F_A04_BE518435Ta11P043D11P017A051F1_032.ab1   817 
  821  C USDA028R_A04_BE518435Ta11P043D11P017A051R1_032.ab1   826 
  825    USDA028F_A04_BE518435Ta11P043D11P017A051F1_032.ab1   825 
  833  C USDA028R_A04_BE518435Ta11P043D11P017A051R1_032.ab1   814 
  841    USDA028F_A04_BE518435Ta11P043D11P017A051F1_032.ab1   841 
  853  C USDA028R_A04_BE518435Ta11P043D11P017A051R1_032.ab1   794 
  857    USDA028F_A04_BE518435Ta11P043D11P017A051F1_032.ab1   857 
  861  C USDA028R_A04_BE518435Ta11P043D11P017A051R1_032.ab1   786 
  873    USDA028F_A04_BE518435Ta11P043D11P017A051F1_032.ab1   873 
  881  C USDA028R_A04_BE518435Ta11P043D11P017A051R1_032.ab1   766 
  897    USDA028F_A04_BE518435Ta11P043D11P017A051F1_032.ab1   897 
  901  C USDA028R_A04_BE518435Ta11P043D11P017A051R1_032.ab1   746 
Contig length: old 1646, new 1646

Contig length: old 1646, new 1646
New start: 0