No. words: 1841; after pruning: 1801


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.7 (1,1:1641)  193  0.51 0.51 0.00  USDA028F_D04_BE518435Ta14P043D11P017A051F1_026.ab1      725   922 (0)  C USDA028R_D04_BE518435Ta14P043D11P017A051R1_026.ab1   (0)   919   721 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1    USDA028F_D04_BE518435Ta14P043D11P017A051F1_026.ab1     1 
  788  C USDA028R_D04_BE518435Ta14P043D11P017A051R1_026.ab1   856 
  792    USDA028F_D04_BE518435Ta14P043D11P017A051F1_026.ab1   792 
  800  C USDA028R_D04_BE518435Ta14P043D11P017A051R1_026.ab1   844 
  820    USDA028F_D04_BE518435Ta14P043D11P017A051F1_026.ab1   820 
  832  C USDA028R_D04_BE518435Ta14P043D11P017A051R1_026.ab1   812 
  836    USDA028F_D04_BE518435Ta14P043D11P017A051F1_026.ab1   836 
  848  C USDA028R_D04_BE518435Ta14P043D11P017A051R1_026.ab1   796 
Contig length: old 1642, new 1643

Contig length: old 1643, new 1643
New start: 0