No. words: 1814; after pruning: 1788


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.1 (1,1:1640)  170  0.58 0.00 0.00  USDA028F_E04_BE518435Ta15P043D11P017A051F1_024.ab1      703   875 (0)  C USDA028R_E04_BE518435Ta15P043D11P017A051R1_024.ab1   (0)   939   767 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  86 nodes

 45 str. conn. components

Path
    1    USDA028F_E04_BE518435Ta15P043D11P017A051F1_024.ab1     1 
  764  C USDA028R_E04_BE518435Ta15P043D11P017A051R1_024.ab1   878 
  768    USDA028F_E04_BE518435Ta15P043D11P017A051F1_024.ab1   768 
  792  C USDA028R_E04_BE518435Ta15P043D11P017A051R1_024.ab1   850 
  808    USDA028F_E04_BE518435Ta15P043D11P017A051F1_024.ab1   808 
  816  C USDA028R_E04_BE518435Ta15P043D11P017A051R1_024.ab1   826 
  820    USDA028F_E04_BE518435Ta15P043D11P017A051F1_024.ab1   820 
  824  C USDA028R_E04_BE518435Ta15P043D11P017A051R1_024.ab1   818 
Contig length: old 1641, new 1641

Contig length: old 1641, new 1641
New start: 0