No. words: 1849; after pruning: 1809


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.5 (1,1:1639)  205  0.96 0.00 0.00  USDA028F_A05_BE518435Ta19P043D11P017A051F1_047.ab1      734   942 (0)  C USDA028R_A05_BE518435Ta19P043D11P017A051R1_047.ab1   (0)   907   699 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  100 nodes

 52 str. conn. components

Path
    1    USDA028F_A05_BE518435Ta19P043D11P017A051F1_047.ab1     1 
  802  C USDA028R_A05_BE518435Ta19P043D11P017A051R1_047.ab1   839 
  817    USDA028F_A05_BE518435Ta19P043D11P017A051F1_047.ab1   817 
  821  C USDA028R_A05_BE518435Ta19P043D11P017A051R1_047.ab1   820 
  889    USDA028F_A05_BE518435Ta19P043D11P017A051F1_047.ab1   889 
  893  C USDA028R_A05_BE518435Ta19P043D11P017A051R1_047.ab1   748 
Contig length: old 1640, new 1640

Contig length: old 1640, new 1640
New start: 0