No. words: 1811; after pruning: 1785


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.0 (1,1:1641)  160  1.78 0.00 0.00  USDA028F_B05_BE518435Ta20P043D11P017A051F1_045.ab1      728   896 (0)  C USDA028R_B05_BE518435Ta20P043D11P017A051R1_045.ab1   (0)   915   747 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1    USDA028F_B05_BE518435Ta20P043D11P017A051F1_045.ab1     1 
  784  C USDA028R_B05_BE518435Ta20P043D11P017A051R1_045.ab1   859 
  808    USDA028F_B05_BE518435Ta20P043D11P017A051F1_045.ab1   808 
  816  C USDA028R_B05_BE518435Ta20P043D11P017A051R1_045.ab1   827 
  820    USDA028F_B05_BE518435Ta20P043D11P017A051F1_045.ab1   820 
  824  C USDA028R_B05_BE518435Ta20P043D11P017A051R1_045.ab1   819 
  828    USDA028F_B05_BE518435Ta20P043D11P017A051F1_045.ab1   828 
  832  C USDA028R_B05_BE518435Ta20P043D11P017A051R1_045.ab1   811 
Contig length: old 1642, new 1642

Contig length: old 1642, new 1642
New start: 0