No. words: 1707; after pruning: 1681


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.4 (1,1:1641)   65  0.00 0.00 0.00  USDA028F_D05_BE518435Ta22P043D11P017A051F1_041.ab1      861   925 (0)  C USDA028R_D05_BE518435Ta22P043D11P017A051R1_041.ab1   (0)   782   718 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  34 nodes

 19 str. conn. components

Path
    1    USDA028F_D05_BE518435Ta22P043D11P017A051F1_041.ab1     1 
  864  C USDA028R_D05_BE518435Ta22P043D11P017A051R1_041.ab1   779 
  880    USDA028F_D05_BE518435Ta22P043D11P017A051F1_041.ab1   880 
  884  C USDA028R_D05_BE518435Ta22P043D11P017A051R1_041.ab1   759 
  888    USDA028F_D05_BE518435Ta22P043D11P017A051F1_041.ab1   888 
  896  C USDA028R_D05_BE518435Ta22P043D11P017A051R1_041.ab1   747 
  904    USDA028F_D05_BE518435Ta22P043D11P017A051F1_041.ab1   904 
  908  C USDA028R_D05_BE518435Ta22P043D11P017A051R1_041.ab1   735 
  916    USDA028F_D05_BE518435Ta22P043D11P017A051F1_041.ab1   916 
  920  C USDA028R_D05_BE518435Ta22P043D11P017A051R1_041.ab1   723 
Contig length: old 1642, new 1642

Contig length: old 1642, new 1642
New start: 0