No. words: 1805; after pruning: 1779


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.3 (1,1:1646)  155  0.63 0.00 0.00  USDA028F_E05_BE518435Ta23P043D11P017A051F1_039.ab1      743   900 (0)  C USDA028R_E05_BE518435Ta23P043D11P017A051R1_039.ab1   (0)   905   748 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    USDA028F_E05_BE518435Ta23P043D11P017A051F1_039.ab1     1 
  791  C USDA028R_E05_BE518435Ta23P043D11P017A051R1_039.ab1   857 
  799    USDA028F_E05_BE518435Ta23P043D11P017A051F1_039.ab1   799 
  803  C USDA028R_E05_BE518435Ta23P043D11P017A051R1_039.ab1   845 
  815    USDA028F_E05_BE518435Ta23P043D11P017A051F1_039.ab1   815 
  823  C USDA028R_E05_BE518435Ta23P043D11P017A051R1_039.ab1   825 
  827    USDA028F_E05_BE518435Ta23P043D11P017A051F1_039.ab1   827 
  835  C USDA028R_E05_BE518435Ta23P043D11P017A051R1_039.ab1   813 
  839    USDA028F_E05_BE518435Ta23P043D11P017A051F1_039.ab1   839 
  855  C USDA028R_E05_BE518435Ta23P043D11P017A051R1_039.ab1   793 
  871    USDA028F_E05_BE518435Ta23P043D11P017A051F1_039.ab1   871 
  875  C USDA028R_E05_BE518435Ta23P043D11P017A051R1_039.ab1   773 
Contig length: old 1647, new 1647

Contig length: old 1647, new 1647
New start: 0