No. words: 1768; after pruning: 1742


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 0.7 (1,1:1695)   60  1.39 1.39 1.39  USDA010F_B01_BE518435Tu02P017A05P017A11F1_013.ab1      760   831 (0)  C USDA010R_B01_BE518435Tu02P017A05P017A11R1_013.ab1   (0)   937   866 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  30 nodes

 17 str. conn. components

Path
    1    USDA010F_B01_BE518435Tu02P017A05P017A11F1_013.ab1     1 
  783  C USDA010R_B01_BE518435Tu02P017A05P017A11R1_013.ab1   914 
  787    USDA010F_B01_BE518435Tu02P017A05P017A11F1_013.ab1   787 
  803  C USDA010R_B01_BE518435Tu02P017A05P017A11R1_013.ab1   894 
  821    USDA010F_B01_BE518435Tu02P017A05P017A11F1_013.ab1   821 
  825  C USDA010R_B01_BE518435Tu02P017A05P017A11R1_013.ab1   872 
Contig length: old 1696, new 1696

Contig length: old 1696, new 1696
New start: 0