No. words: 1152; after pruning: 1126


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:-1)  539  1.41 0.00 0.00  USDA007_G03_BE585781Ld01P017B04B10F1_019.ab1        1   568 (15)    USDA007_G09_BE585781Ld01P017B04B10R1_067.ab1        2   569 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  272 nodes

 138 str. conn. components

Path
    1    USDA007_G09_BE585781Ld01P017B04B10R1_067.ab1     1 
    5    USDA007_G03_BE585781Ld01P017B04B10F1_019.ab1     4 
   74    USDA007_G09_BE585781Ld01P017B04B10R1_067.ab1    74 
   78    USDA007_G03_BE585781Ld01P017B04B10F1_019.ab1    77 
  110    USDA007_G09_BE585781Ld01P017B04B10R1_067.ab1   110 
  114    USDA007_G03_BE585781Ld01P017B04B10F1_019.ab1   113 
  118    USDA007_G09_BE585781Ld01P017B04B10R1_067.ab1   118 
  122    USDA007_G03_BE585781Ld01P017B04B10F1_019.ab1   121 
  210    USDA007_G09_BE585781Ld01P017B04B10R1_067.ab1   210 
  214    USDA007_G03_BE585781Ld01P017B04B10F1_019.ab1   213 
  262    USDA007_G09_BE585781Ld01P017B04B10R1_067.ab1   262 
  266    USDA007_G03_BE585781Ld01P017B04B10F1_019.ab1   265 
  342    USDA007_G09_BE585781Ld01P017B04B10R1_067.ab1   342 
  346    USDA007_G03_BE585781Ld01P017B04B10F1_019.ab1   345 
Contig length: old 584, new 584

Contig length: old 584, new 584
New start: 0 
S Change at: 38; seg lengths: entry 1, contig 1