No. words: 973; after pruning: 933


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.3 (1,1:327)  316  0.00 0.31 0.31  USDA007_D04_BE585781Ld06P017B04B10F1_026.ab1        2   328 (139)  C USDA007_D10_BE585781Ld06P017B04B10R1_074.ab1   (179)   327     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1  C USDA007_D10_BE585781Ld06P017B04B10R1_074.ab1   506 
  355    USDA007_D04_BE585781Ld06P017B04B10F1_026.ab1   176 
  359  C USDA007_D10_BE585781Ld06P017B04B10R1_074.ab1   148 
  427    USDA007_D04_BE585781Ld06P017B04B10F1_026.ab1   248 
  459  C USDA007_D10_BE585781Ld06P017B04B10R1_074.ab1    48 
  467    USDA007_D04_BE585781Ld06P017B04B10F1_026.ab1   288 
  475  C USDA007_D10_BE585781Ld06P017B04B10R1_074.ab1    32 
  483    USDA007_D04_BE585781Ld06P017B04B10F1_026.ab1   304 
  487  C USDA007_D10_BE585781Ld06P017B04B10R1_074.ab1    20 
  491    USDA007_D04_BE585781Ld06P017B04B10F1_026.ab1   312 
Contig length: old 645, new 646

Contig length: old 646, new 646
New start: 0 
S Change at: 522; seg lengths: entry 1, contig 1