No. words: 1070; after pruning: 1044


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 7.7 (1,1:393)  387  0.00 0.26 0.00  USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1        3   394 (161)  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1   (122)   393     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1   515 
  165    USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1    44 
  169  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1   347 
  197    USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1    76 
  201  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1   315 
  213    USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1    92 
  217  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1   299 
  349    USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1   228 
  361  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1   155 
  369    USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1   248 
  377  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1   139 
  389    USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1   268 
  401  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1   115 
  409    USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1   288 
  437  C USDA002R_C10_BE586140Ld05P004C04C10R1_070.ab1    79 
  445    USDA002F_C10_BE586140Ld05P004C04C10F1_070.ab1   324 
Contig length: old 676, new 676

Contig length: old 676, new 676
New start: 0