No. words: 1041; after pruning: 1015


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:366)  364  0.00 0.00 0.00  USDA002F_E10_BE586140Ld07P004C04C10F1_071.ab1        1   367 (134)  C USDA002R_E10_BE586140Ld07P004C04C10R1_071.ab1   (173)   367     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  186 nodes

 95 str. conn. components

Path
    1  C USDA002R_E10_BE586140Ld07P004C04C10R1_071.ab1   540 
  369    USDA002F_E10_BE586140Ld07P004C04C10F1_071.ab1   196 
  389  C USDA002R_E10_BE586140Ld07P004C04C10R1_071.ab1   152 
  393    USDA002F_E10_BE586140Ld07P004C04C10F1_071.ab1   220 
  401  C USDA002R_E10_BE586140Ld07P004C04C10R1_071.ab1   140 
  413    USDA002F_E10_BE586140Ld07P004C04C10F1_071.ab1   240 
  425  C USDA002R_E10_BE586140Ld07P004C04C10R1_071.ab1   116 
  433    USDA002F_E10_BE586140Ld07P004C04C10F1_071.ab1   260 
  441  C USDA002R_E10_BE586140Ld07P004C04C10R1_071.ab1   100 
  449    USDA002F_E10_BE586140Ld07P004C04C10F1_071.ab1   276 
  457  C USDA002R_E10_BE586140Ld07P004C04C10R1_071.ab1    84 
  469    USDA002F_E10_BE586140Ld07P004C04C10F1_071.ab1   296 
Contig length: old 674, new 674

Contig length: old 674, new 674
New start: 0