No. words: 1052; after pruning: 1026


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:382)  381  0.00 0.00 0.00  USDA002F_G10_BE586140Ld09P004C04C10F1_072.ab1        1   383 (122)  C USDA002R_G10_BE586140Ld09P004C04C10R1_072.ab1   (164)   383     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  194 nodes

 99 str. conn. components

Path
    1  C USDA002R_G10_BE586140Ld09P004C04C10R1_072.ab1   547 
  372    USDA002F_G10_BE586140Ld09P004C04C10F1_072.ab1   208 
  384  C USDA002R_G10_BE586140Ld09P004C04C10R1_072.ab1   164 
  444    USDA002F_G10_BE586140Ld09P004C04C10F1_072.ab1   280 
  448  C USDA002R_G10_BE586140Ld09P004C04C10R1_072.ab1   100 
  464    USDA002F_G10_BE586140Ld09P004C04C10F1_072.ab1   300 
  468  C USDA002R_G10_BE586140Ld09P004C04C10R1_072.ab1    80 
  488    USDA002F_G10_BE586140Ld09P004C04C10F1_072.ab1   324 
  496  C USDA002R_G10_BE586140Ld09P004C04C10R1_072.ab1    52 
  500    USDA002F_G10_BE586140Ld09P004C04C10F1_072.ab1   336 
  508  C USDA002R_G10_BE586140Ld09P004C04C10R1_072.ab1    40 
  516    USDA002F_G10_BE586140Ld09P004C04C10F1_072.ab1   352 
  520  C USDA002R_G10_BE586140Ld09P004C04C10R1_072.ab1    28 
  528    USDA002F_G10_BE586140Ld09P004C04C10F1_072.ab1   364 
Contig length: old 669, new 669

Contig length: old 669, new 669
New start: 0