No. words: 938; after pruning: 912


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:302)  300  0.00 0.00 0.00  USDA013F_A10_BE591290Ld03P032B02P032B08F1_080.ab1        1   303 (146)  C USDA013R_A10_BE591290Ld03P032B02P032B08R1_080.ab1   (186)   303     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  154 nodes

 79 str. conn. components

Path
    1  C USDA013R_A10_BE591290Ld03P032B02P032B08R1_080.ab1   489 
  242    USDA013F_A10_BE591290Ld03P032B02P032B08F1_080.ab1    56 
  250  C USDA013R_A10_BE591290Ld03P032B02P032B08R1_080.ab1   240 
  306    USDA013F_A10_BE591290Ld03P032B02P032B08F1_080.ab1   120 
  318  C USDA013R_A10_BE591290Ld03P032B02P032B08R1_080.ab1   172 
  374    USDA013F_A10_BE591290Ld03P032B02P032B08F1_080.ab1   188 
Contig length: old 635, new 635

Contig length: old 635, new 635
New start: 0