No. words: 946; after pruning: 920


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:300)  298  0.00 0.00 0.00  USDA013F_B10_BE591290Ld04P032B02P032B08F1_078.ab1        1   301 (158)  C USDA013R_B10_BE591290Ld04P032B02P032B08R1_078.ab1   (186)   301     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1  C USDA013R_B10_BE591290Ld04P032B02P032B08R1_078.ab1   487 
  214    USDA013F_B10_BE591290Ld04P032B02P032B08F1_078.ab1    28 
  222  C USDA013R_B10_BE591290Ld04P032B02P032B08R1_078.ab1   266 
  234    USDA013F_B10_BE591290Ld04P032B02P032B08F1_078.ab1    48 
  238  C USDA013R_B10_BE591290Ld04P032B02P032B08R1_078.ab1   250 
  242    USDA013F_B10_BE591290Ld04P032B02P032B08F1_078.ab1    56 
  250  C USDA013R_B10_BE591290Ld04P032B02P032B08R1_078.ab1   238 
  282    USDA013F_B10_BE591290Ld04P032B02P032B08F1_078.ab1    96 
  318  C USDA013R_B10_BE591290Ld04P032B02P032B08R1_078.ab1   170 
  322    USDA013F_B10_BE591290Ld04P032B02P032B08F1_078.ab1   136 
Contig length: old 645, new 645

Contig length: old 645, new 645
New start: 0