No. words: 966; after pruning: 940


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.7 (1,1:306)  299  0.00 0.00 0.33  USDA013F_G10_BE591290Ld09P032B02P032B08F1_068.ab1        1   307 (156)  C USDA013R_G10_BE591290Ld09P032B02P032B08R1_068.ab1   (197)   306     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  154 nodes

 79 str. conn. components

Path
    1  C USDA013R_G10_BE591290Ld09P032B02P032B08R1_068.ab1   503 
  385    USDA013F_G10_BE591290Ld09P032B02P032B08F1_068.ab1   188 
  389  C USDA013R_G10_BE591290Ld09P032B02P032B08R1_068.ab1   115 
  393    USDA013F_G10_BE591290Ld09P032B02P032B08F1_068.ab1   196 
  453  C USDA013R_G10_BE591290Ld09P032B02P032B08R1_068.ab1    51 
  473    USDA013F_G10_BE591290Ld09P032B02P032B08F1_068.ab1   276 
  481  C USDA013R_G10_BE591290Ld09P032B02P032B08R1_068.ab1    24 
  489    USDA013F_G10_BE591290Ld09P032B02P032B08F1_068.ab1   292 
Contig length: old 659, new 660

Contig length: old 660, new 660
New start: 0