No. words: 1426; after pruning: 1386


Histogram of relative pair offsets, for read pairs with multiple alignments:
72    12
99    30

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:726)  653  0.15 0.00 0.00  USDA014F_D01_BE591501As02P032C02P032C08F1_009.ab1        1   661 (0)  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   (38)   727    67 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   765 
   62    USDA014F_D01_BE591501As02P032C02P032C08F1_009.ab1    24 
   94  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   672 
   98    USDA014F_D01_BE591501As02P032C02P032C08F1_009.ab1    60 
  142  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   624 
  182    USDA014F_D01_BE591501As02P032C02P032C08F1_009.ab1   144 
  186  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   580 
  246    USDA014F_D01_BE591501As02P032C02P032C08F1_009.ab1   208 
  254  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   512 
  266    USDA014F_D01_BE591501As02P032C02P032C08F1_009.ab1   228 
  270  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   496 
  278    USDA014F_D01_BE591501As02P032C02P032C08F1_009.ab1   240 
  294  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   472 
  314    USDA014F_D01_BE591501As02P032C02P032C08F1_009.ab1   276 
  375  C USDA014R_D01_BE591501As02P032C02P032C08R1_009.ab1   391 
Contig length: old 765, new 765

Contig length: old 765, new 765
New start: 0