No. words: 1322; after pruning: 1296


Histogram of relative pair offsets, for read pairs with multiple alignments:
72     6
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:709)  469  0.61 0.00 0.00  USDA014F_A02_BE591501Ld03P032C02P032C08F1_016.ab1        1   489 (0)  C USDA014R_A02_BE591501Ld03P032C02P032C08R1_016.ab1   (123)   710   222 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA014R_A02_BE591501Ld03P032C02P032C08R1_016.ab1   833 
  147    USDA014F_A02_BE591501Ld03P032C02P032C08F1_016.ab1    24 
  159  C USDA014R_A02_BE591501Ld03P032C02P032C08R1_016.ab1   675 
  175    USDA014F_A02_BE591501Ld03P032C02P032C08F1_016.ab1    52 
  203  C USDA014R_A02_BE591501Ld03P032C02P032C08R1_016.ab1   631 
  207    USDA014F_A02_BE591501Ld03P032C02P032C08F1_016.ab1    84 
  215  C USDA014R_A02_BE591501Ld03P032C02P032C08R1_016.ab1   619 
  311    USDA014F_A02_BE591501Ld03P032C02P032C08F1_016.ab1   188 
  335  C USDA014R_A02_BE591501Ld03P032C02P032C08R1_016.ab1   499 
  339    USDA014F_A02_BE591501Ld03P032C02P032C08F1_016.ab1   216 
  347  C USDA014R_A02_BE591501Ld03P032C02P032C08R1_016.ab1   487 
Contig length: old 833, new 833

Contig length: old 833, new 833
New start: 0