No. words: 922; after pruning: 896


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.6 (1,1:659)  117  1.55 0.00 0.00  USDA014F_E02_BE591501Ld07P032C02P032C08F1_008.ab1        1   129 (0)  C USDA014R_E02_BE591501Ld07P032C02P032C08R1_008.ab1   (133)   660   532 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  60 nodes

 32 str. conn. components

Path
    1  C USDA014R_E02_BE591501Ld07P032C02P032C08R1_008.ab1   793 
Contig length: old 793, new 793

Contig length: old 793, new 793
New start: 0