No. words: 1074; after pruning: 1048


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.6 (1,1:729)  165  0.00 0.56 0.00  USDA014F_F02_BE591501Ld08P032C02P032C08F1_006.ab1        1   180 (0)  C USDA014R_F02_BE591501Ld08P032C02P032C08R1_006.ab1   (163)   731   551 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1  C USDA014R_F02_BE591501Ld08P032C02P032C08R1_006.ab1   894 
  183    USDA014F_F02_BE591501Ld08P032C02P032C08F1_006.ab1    19 
  187  C USDA014R_F02_BE591501Ld08P032C02P032C08R1_006.ab1   708 
  191    USDA014F_F02_BE591501Ld08P032C02P032C08F1_006.ab1    27 
  199  C USDA014R_F02_BE591501Ld08P032C02P032C08R1_006.ab1   696 
  219    USDA014F_F02_BE591501Ld08P032C02P032C08F1_006.ab1    55 
  231  C USDA014R_F02_BE591501Ld08P032C02P032C08R1_006.ab1   664 
  235    USDA014F_F02_BE591501Ld08P032C02P032C08F1_006.ab1    71 
  239  C USDA014R_F02_BE591501Ld08P032C02P032C08R1_006.ab1   656 
  259    USDA014F_F02_BE591501Ld08P032C02P032C08F1_006.ab1    95 
  263  C USDA014R_F02_BE591501Ld08P032C02P032C08R1_006.ab1   632 
Contig length: old 894, new 894

Contig length: old 894, new 894
New start: 0