No. words: 1550; after pruning: 1524


Histogram of relative pair offsets, for read pairs with multiple alignments:
72     8
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 14.1 (1,1:665)  645  0.30 0.00 0.00  USDA014F_G02_BE591501Ld09P032C02P032C08F1_004.ab1        1   661 (99)  C USDA014R_G02_BE591501Ld09P032C02P032C08R1_004.ab1   (124)   666     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  324 nodes

 164 str. conn. components

Path
    1  C USDA014R_G02_BE591501Ld09P032C02P032C08R1_004.ab1   790 
  252    USDA014F_G02_BE591501Ld09P032C02P032C08F1_004.ab1   128 
  268  C USDA014R_G02_BE591501Ld09P032C02P032C08R1_004.ab1   523 
  292    USDA014F_G02_BE591501Ld09P032C02P032C08F1_004.ab1   168 
  308  C USDA014R_G02_BE591501Ld09P032C02P032C08R1_004.ab1   483 
  344    USDA014F_G02_BE591501Ld09P032C02P032C08F1_004.ab1   220 
  352  C USDA014R_G02_BE591501Ld09P032C02P032C08R1_004.ab1   439 
  400    USDA014F_G02_BE591501Ld09P032C02P032C08F1_004.ab1   276 
  408  C USDA014R_G02_BE591501Ld09P032C02P032C08R1_004.ab1   383 
  763    USDA014F_G02_BE591501Ld09P032C02P032C08F1_004.ab1   639 
  767  C USDA014R_G02_BE591501Ld09P032C02P032C08R1_004.ab1    24 
  779    USDA014F_G02_BE591501Ld09P032C02P032C08F1_004.ab1   655 
Contig length: old 884, new 884

Contig length: old 884, new 884
New start: 0