No. words: 1379; after pruning: 1353


Histogram of relative pair offsets, for read pairs with multiple alignments:
72     8
99    12

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 13.2 (1,1:655)  636  0.00 0.15 0.00  USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1        1   651 (23)  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   (48)   657     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   705 
   98    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1    49 
  110  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   596 
  118    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1    69 
  130  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   576 
  134    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1    85 
  138  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   568 
  190    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   141 
  222  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   484 
  278    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   229 
  442  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   264 
  450    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   401 
  466  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   240 
  478    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   429 
  514  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   192 
  522    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   473 
  530  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   176 
  550    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   501 
  562  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1   144 
  578    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   529 
  618  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1    88 
  630    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   581 
  646  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1    60 
  658    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   609 
  662  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1    44 
  666    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   617 
  678  C USDA014R_A01_BE591501Tu01P032C02P032C08R1_015.ab1    28 
  682    USDA014F_A01_BE591501Tu01P032C02P032C08F1_015.ab1   633 
Contig length: old 723, new 723

Contig length: old 723, new 723
New start: 0