No. words: 1029; after pruning: 1003


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:474)  462  0.00 0.00 0.00  USDA011F_C03_BE605063As01P017H03P017H09F1_027.ab1        1   475 (36)  C USDA011R_C03_BE605063As01P017H03P017H09R1_027.ab1   (43)   475     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA011R_C03_BE605063As01P017H03P017H09R1_027.ab1   518 
  407    USDA011F_C03_BE605063As01P017H03P017H09F1_027.ab1   364 
  423  C USDA011R_C03_BE605063As01P017H03P017H09R1_027.ab1    96 
  467    USDA011F_C03_BE605063As01P017H03P017H09F1_027.ab1   424 
Contig length: old 554, new 554

Contig length: old 554, new 554
New start: 0