No. words: 1284; after pruning: 1258


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.7 (1,1:480)  467  0.00 0.00 0.00  USDA011F_G03_BE605063Ld01P017H03P017H09F1_019.ab1        1   481 (179)  C USDA011R_G03_BE605063Ld01P017H03P017H09R1_019.ab1   (143)   481     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C USDA011R_G03_BE605063Ld01P017H03P017H09R1_019.ab1   624 
  471    USDA011F_G03_BE605063Ld01P017H03P017H09F1_019.ab1   328 
  483  C USDA011R_G03_BE605063Ld01P017H03P017H09R1_019.ab1   142 
  515    USDA011F_G03_BE605063Ld01P017H03P017H09F1_019.ab1   372 
  519  C USDA011R_G03_BE605063Ld01P017H03P017H09R1_019.ab1   106 
  555    USDA011F_G03_BE605063Ld01P017H03P017H09F1_019.ab1   412 
  559  C USDA011R_G03_BE605063Ld01P017H03P017H09R1_019.ab1    66 
  571    USDA011F_G03_BE605063Ld01P017H03P017H09F1_019.ab1   428 
  575  C USDA011R_G03_BE605063Ld01P017H03P017H09R1_019.ab1    50 
  587    USDA011F_G03_BE605063Ld01P017H03P017H09F1_019.ab1   444 
Contig length: old 803, new 803

Contig length: old 803, new 803
New start: 0