No. words: 1265; after pruning: 1239


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:476)  461  0.00 0.00 0.00  USDA011F_H03_BE605063Ld02P017H03P017H09F1_017.ab1        1   477 (169)  C USDA011R_H03_BE605063Ld02P017H03P017H09R1_017.ab1   (142)   477     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C USDA011R_H03_BE605063Ld02P017H03P017H09R1_017.ab1   619 
  174    USDA011F_H03_BE605063Ld02P017H03P017H09F1_017.ab1    32 
  198  C USDA011R_H03_BE605063Ld02P017H03P017H09R1_017.ab1   422 
  546    USDA011F_H03_BE605063Ld02P017H03P017H09F1_017.ab1   404 
  554  C USDA011R_H03_BE605063Ld02P017H03P017H09R1_017.ab1    66 
  570    USDA011F_H03_BE605063Ld02P017H03P017H09F1_017.ab1   428 
  574  C USDA011R_H03_BE605063Ld02P017H03P017H09R1_017.ab1    46 
  582    USDA011F_H03_BE605063Ld02P017H03P017H09F1_017.ab1   440 
Contig length: old 788, new 788

Contig length: old 788, new 788
New start: 0