No. words: 1272; after pruning: 1246


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.5 (1,1:479)  463  0.21 0.00 0.00  USDA011F_A04_BE605063Ld03P017H03P017H09F1_032.ab1        1   480 (168)  C USDA011R_A04_BE605063Ld03P017H03P017H09R1_032.ab1   (144)   480     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA011R_A04_BE605063Ld03P017H03P017H09R1_032.ab1   624 
  472    USDA011F_A04_BE605063Ld03P017H03P017H09F1_032.ab1   328 
  540  C USDA011R_A04_BE605063Ld03P017H03P017H09R1_032.ab1    85 
  552    USDA011F_A04_BE605063Ld03P017H03P017H09F1_032.ab1   408 
  560  C USDA011R_A04_BE605063Ld03P017H03P017H09R1_032.ab1    65 
  564    USDA011F_A04_BE605063Ld03P017H03P017H09F1_032.ab1   420 
Contig length: old 792, new 792

Contig length: old 792, new 792
New start: 0