No. words: 1249; after pruning: 1223


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.4 (1,1:468)  454  0.00 0.00 0.00  USDA011F_C04_BE605063Ld05P017H03P017H09F1_028.ab1        1   469 (162)  C USDA011R_C04_BE605063Ld05P017H03P017H09R1_028.ab1   (149)   469     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C USDA011R_C04_BE605063Ld05P017H03P017H09R1_028.ab1   618 
  465    USDA011F_C04_BE605063Ld05P017H03P017H09F1_028.ab1   316 
  477  C USDA011R_C04_BE605063Ld05P017H03P017H09R1_028.ab1   142 
  489    USDA011F_C04_BE605063Ld05P017H03P017H09F1_028.ab1   340 
  497  C USDA011R_C04_BE605063Ld05P017H03P017H09R1_028.ab1   122 
  545    USDA011F_C04_BE605063Ld05P017H03P017H09F1_028.ab1   396 
  553  C USDA011R_C04_BE605063Ld05P017H03P017H09R1_028.ab1    66 
  561    USDA011F_C04_BE605063Ld05P017H03P017H09F1_028.ab1   412 
  573  C USDA011R_C04_BE605063Ld05P017H03P017H09R1_028.ab1    46 
  577    USDA011F_C04_BE605063Ld05P017H03P017H09F1_028.ab1   428 
Contig length: old 780, new 780

Contig length: old 780, new 780
New start: 0