No. words: 1269; after pruning: 1243


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:480)  461  0.00 0.00 0.21  USDA011F_D04_BE605063Ld06P017H03P017H09F1_026.ab1        1   481 (166)  C USDA011R_D04_BE605063Ld06P017H03P017H09R1_026.ab1   (142)   480     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA011R_D04_BE605063Ld06P017H03P017H09R1_026.ab1   622 
  494    USDA011F_D04_BE605063Ld06P017H03P017H09F1_026.ab1   352 
  506  C USDA011R_D04_BE605063Ld06P017H03P017H09R1_026.ab1   117 
  570    USDA011F_D04_BE605063Ld06P017H03P017H09F1_026.ab1   428 
Contig length: old 788, new 789

Contig length: old 789, new 789
New start: 0