No. words: 1259; after pruning: 1233


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.8 (1,1:470)  454  0.00 0.00 0.00  USDA011F_F04_BE605063Ld08P017H03P017H09F1_022.ab1        5   471 (173)  C USDA011R_F04_BE605063Ld08P017H03P017H09R1_022.ab1   (148)   467     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C USDA011R_F04_BE605063Ld08P017H03P017H09R1_022.ab1   615 
  468    USDA011F_F04_BE605063Ld08P017H03P017H09F1_022.ab1   324 
  536  C USDA011R_F04_BE605063Ld08P017H03P017H09R1_022.ab1    80 
  548    USDA011F_F04_BE605063Ld08P017H03P017H09F1_022.ab1   404 
Contig length: old 788, new 788

Contig length: old 788, new 788
New start: 0