No. words: 1266; after pruning: 1240


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 8.6 (1,1:476)  458  0.00 0.00 0.00  USDA011F_G04_BE605063Ld09P017H03P017H09F1_020.ab1        5   477 (140)  C USDA011R_G04_BE605063Ld09P017H03P017H09R1_020.ab1   (176)   473     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C USDA011R_G04_BE605063Ld09P017H03P017H09R1_020.ab1   649 
  496    USDA011F_G04_BE605063Ld09P017H03P017H09F1_020.ab1   324 
  568  C USDA011R_G04_BE605063Ld09P017H03P017H09R1_020.ab1    82 
  576    USDA011F_G04_BE605063Ld09P017H03P017H09F1_020.ab1   404 
Contig length: old 789, new 789

Contig length: old 789, new 789
New start: 0