No. words: 1287; after pruning: 1261


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:544)  518  0.92 0.00 0.00  USDA011F_H04_BE605063Ld10P017H03P017H09F1_018.ab1        1   545 (141)  C USDA011R_H04_BE605063Ld10P017H03P017H09R1_018.ab1   (56)   545     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C USDA011R_H04_BE605063Ld10P017H03P017H09R1_018.ab1   601 
  455    USDA011F_H04_BE605063Ld10P017H03P017H09F1_018.ab1   399 
  459  C USDA011R_H04_BE605063Ld10P017H03P017H09R1_018.ab1   143 
  471    USDA011F_H04_BE605063Ld10P017H03P017H09F1_018.ab1   415 
  487  C USDA011R_H04_BE605063Ld10P017H03P017H09R1_018.ab1   115 
  511    USDA011F_H04_BE605063Ld10P017H03P017H09F1_018.ab1   455 
  515  C USDA011R_H04_BE605063Ld10P017H03P017H09R1_018.ab1    87 
  543    USDA011F_H04_BE605063Ld10P017H03P017H09F1_018.ab1   487 
  564  C USDA011R_H04_BE605063Ld10P017H03P017H09R1_018.ab1    38 
  568    USDA011F_H04_BE605063Ld10P017H03P017H09F1_018.ab1   512 
Contig length: old 742, new 742

Contig length: old 742, new 742
New start: 0