No. words: 1183; after pruning: 1157


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:430)  401  0.00 0.46 0.23  USDA005R3_H09_BE637864Ld02P004D04D10R3_065.ab1        1   431 (187)  C USDA005F3_H09_BE637864Ld02P004D04D10F3_065.ab1   (133)   432     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C USDA005F3_H09_BE637864Ld02P004D04D10F3_065.ab1   565 
  176    USDA005R3_H09_BE637864Ld02P004D04D10R3_065.ab1    41 
  180  C USDA005F3_H09_BE637864Ld02P004D04D10F3_065.ab1   386 
  184    USDA005R3_H09_BE637864Ld02P004D04D10R3_065.ab1    49 
  200  C USDA005F3_H09_BE637864Ld02P004D04D10F3_065.ab1   366 
  212    USDA005R3_H09_BE637864Ld02P004D04D10R3_065.ab1    77 
  220  C USDA005F3_H09_BE637864Ld02P004D04D10F3_065.ab1   346 
  236    USDA005R3_H09_BE637864Ld02P004D04D10R3_065.ab1   101 
  240  C USDA005F3_H09_BE637864Ld02P004D04D10F3_065.ab1   326 
  252    USDA005R3_H09_BE637864Ld02P004D04D10R3_065.ab1   117 
Contig length: old 752, new 753

Contig length: old 753, new 753
New start: 0