No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:407)  384  0.00 0.49 0.00  USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1        1   407 (97)  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1   (133)   409     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1   542 
  252    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   117 
  264  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1   279 
  268    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   133 
  308  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1   235 
  312    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   177 
  340  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1   203 
  344    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   209 
  364  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1   179 
  368    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   233 
  400  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1   143 
  416    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   281 
  420  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1   123 
  452    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   317 
  464  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1    79 
  468    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   333 
  472  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1    71 
  480    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   345 
  488  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1    55 
  492    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   357 
  500  C USDA005F3_A10_BE637864Ld03P004D04D10F3_080.ab1    43 
  512    USDA005R3_A10_BE637864Ld03P004D04D10R3_080.ab1   377 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0